盔状黄芩组Sect. Galericularia A. Hamilt.

半枝莲系Ser. Barbatae C. Y. Wu

盔状黄芩系Ser. Galericulatae Boiss.

小花黄芩系Ser. Minores Juz.

念珠根茎黄芩系Ser. Moniliorrhizae Juz.

狭叶黄芩系Ser. Regelianae Juz.

并头黄芩系Ser. Scordifoliae Juz.

异花黄芩组Sect. Heteranthesia Benth.

膜苞黄芩组Sect. Lupulinaria A. Hamilt.

高山黄芩亚组Subsect. Alpinae Juz

东方黄芩亚组Subsect. Orientales Juz.

腋序黄芩组Sect. Maschalostachys Benth.

腋花黄芩系Ser. Axilliflorae C. Y. Wu

岩藿香系Ser. Franchetianae C. Y. Wu et H. W. Li

裂叶黄芩系Ser. Incisae C. Y. Wu

石娱蚣草系Ser. Sessilifoliae C. Y. Wu

顶序黄芩组Sect. Stachymacris A. Hamilt.

狭叶黄芩亚组Subsect. Angustifoliae Benth

宽叶黄芩亚组Subsect. Peregrinae Boiss.